HotLink Database, v1.5 2004 october 11


This database of links contains about 1,000 entries. Some of them are undoubtedly outdated/broken; I revise the list as I encounter problems, so if you find any problems here, please send me e-mail. I'm in the process of re-formatting this database for (my) easier access (not for appearance). The reformatted links are filed under one of the following headings, and are also preceded by keywords, so you can search for cross-listed entries by using your browser's "find" feature and the keywords listed in parentheses after each topic description.


Biochemical information ("biochem")
Bioinformatics databases, analysis servers, advice, commentary, and more... ("bioinfo", "databases", "searching", "tools", "lists")
Books/Bookstores ("books")
Chemical Information ("chem")
Denison University, Blue Owl Hollow, and Licking County ("local")
Dictionaries/Thesauri/Encyclopedias ("dictionary")
Education Resources ("learn")
Entertainment ("entertain")
Equipment and Hardware ("hardware")
Grant and Funding Opportunities ("funding")
Internet and more general computer stuff ("software")
Japan and things Japanese ("japan")
Job search
Journals/Indices/Card catalogs ("library")
Maps, etc. ("maps")
Molecular modeling ("model")
Organizations/Companies ("orgs")
Organismal and evolutionary biology/Phylogenetics ("wol")
Outdoors/On-foot ("outdoors")
People ("people")
Shopping On-line ("shopping")
Weather ("weather")


www.cafeshops...ology.6120915
svt.se/hogaff.../hestekor.swf
Backpacking Light - Lightweight Backpacking 101: Introduction
Useful Links from Darst Lab
Department of Chemistry and Biochemistry - Faculty
Sling Shot High Power at KnifeCollection.com
CPC - Digital Art
Molecular Biology and Evolution
ISMLIB Other Software
Phylogenetic Analysis by Maximum Likelihood (PAML)
Search Reviews
NEBcutter V2.0
Chloroplast Working Group
MemoWare - Thousands of Free Ebooks and PDA Documents!
Handango - Palm OS, Pocket PC, Symbian, Java and Phone Software Downloads
MDN: News on Japan as it happens
plastid.txt
Workshop on Molecular Evolution
AAHE Carnegie Teaching Academy Campus Program WebCenter
Phylogenetic Analysis by Maximum Likelihood (PAML)
Actinomycin D fact sheet
Mandelbrot and Julia Set Explorer
HIC-Up
Anecdote Croaks No Doubt Stefani Musical Influences
General Chemistry Online! Virtual classroom, resources and guides for students and teachers of introductory chemistry
General Chemistry Online: FAQ: Chemistry of everyday life: What is a quick test for sucrose?
General Chemistry Online: FAQ: Chemistry of everyday life: Can I simulate soda's effect on the stomach by pouring soda on bacon?
General Chemistry Online: Home
Tufts University - Center for Teaching Excellence
Elsevier Author Gateway
Backflip | take a tour
Gerontology Research Center - Intramural Research Program
Annual Review of Biochemistry
Boehringer Mannheim Nucleic Acid Purification
A Structure for DNA (Nature April 2, 1953)
MutaProt
Current Medline Scanner
HotMolecBase - a database of 'hot molecules'
DeadGrandmother
DeadGrandmother
bio.perl.org - Main page
Molphy
Nat'l Acad Press Catalog: Laboratory Design, Construction, and Renovation:
Evolution in Boston Review
player.htm
Protein Spotlight home page
ChemFinder Searching
ChemLinks Homepage
Virtual ChemLabª
CIAC Internet Hoaxes
ClassroomClipart - K-12 Picture Database
Build your own arrayer
The CMM Home Page
Universal Molecular Modeling Software List
Learning Style Sites
Resources for Innovative Teaching
Computational Biology at Oak Ridge National Laboratory
consort.libra....edu/search/s
CONSORT: Journal title search - all locations
The ConSurf Server
The Young Earth Creation Club
Atomic Absorption and Emission Spectra
Active Learning For The College Classroom
Anthropology Tutorials Menu
Writing Guidelines for Engineering and Science Students
Blast
KD-seizure hypotheses
Discovery Institute
OhioLINK Satellite Image Server
easycarts.net...Pro-Team.html
Seven Steps Toward Better Searching
ep.llnl.gov/m...ivity-IV.html
MIT Biology Hypertextbook - Home
Search Form
International Journal of Organic Evolution
Phylogeny Programs
expasy.hcuge.ch/prosite/
SWISS-MODEL
Firstenberg - Product List Results for "Spectrophotometer "
Japanese-English Dictionary Portal
fp.bio.utk.ed...ats/behe.html
Darwin's Black Box
Visualization tools for bacterial genome alignments
Fundamentals of Acid Base Balance
Gemini Biotech
An On-Line Biology Book
Kuhlman Family Genealogy Forum
Human Genome Working Draft
Chloroplast-Genomics
GNN - Whatsagenome
Hardware reviews
handbook
HighWire
Periodic Table of the Elements
HyperPhysics Intro
Gary Gudelsky, PhD
euGenes: Eukaryote Genes
Ohio - Severe Thunderstorm Warnings
Plant Disease and Insect Picture References
Journal of Chemical Education
GPS Receiver Information, Software, and Hardware Reviews of Garmin, Lowrance, and Magellan
Journal of Biochemical and Biophysical Methods, Volume: 55, Issue: 3, March 28, 2003
Cartography and GIS software for the Macintosh
The Official Kinemage Homepage
RasMol Image Gallery
Evolutionary Theory before Darwin
Product List - VICTOR<sup>2</sup>ª Multilabel Readers
Virtual Student Model Kit
USGS National Mapping Information: Viewing USGS Maps and Aerial Photo Images Online
Virtual Mass Spectrometry Laboratory
The ModularCHEM Consortium
Molecular and Cellular Biology
Molecular and Cellular Biology
DRG Availability
ISEP - Upcoming Meetings
A Practical Guide to GPS -UTM
Great Lakes Lightweight Backpacking
membership.ac...meetings.html
Molecular Expressions: Science, Optics and You - Powers Of 10: Interactive Java Tutorial
The Sputnik resource for the annotation of clustered plant ESTs
World Index: MolVis Resources
myDenison
MyLinks @ breeseitc.com
nar.oupjourna...8/19/3719.pdf
Urban Legend Combat Kit at Netsquirrel.com
Welcome to the Workshop on Molecular Evolution
BBC News | Sci/Tech | First cloned human embryo revealed
Magazine: Beagle Review
NPR Online
NPR's Morning Edition
Nunc Technical Support
Linus Pauling and the Race for DNA: A Documentary History - Special Collections - Oregon State University
Halophiles and Halophilic Environments
Conferences - Guest
PDB Search at EBI (with modeling options)
PDGA FRONT PAGE
Periodic Table from LANL
pga.tigr.org/...rrayIntro.pdf
Learning About Photosynthesis
Nelson: College Teaching & Its Scholarship
php.indiana.e...YOUR PEDAGOGY
NIST Atomic Spectra Database Lines Form
NIST Atomic Spectra Database
NIST Ground levels and ionization energies for the neutral atoms
faculty_biophysics.html
Welcome To Plagiarism.org, the internet plagiarism detection service for authors & education.
PlasmoDB: The Plasmodium Genome Resource
PubCrawler Results for kuhlman
CHAS May/Jun CONTACT LENSES AND CHEMICALS
The Electric Pickle
RateMyProfessors.com - Denison UniversityTeacher Ratings
BioAbstracts via Ohiolink
Pelargonium page
Systemic Changes in the Undergraduate Chemistry Curriculum
Chemistry Drill and Practice Tutorials
Representation Models in Molecular Graphics
Welcome to the BCM Search Launcher
DLC Protocols
GIS, CAD, and mapping daily news provided by Spatial News
The Ellington Lab at the University of Texas at Austin
Social Security Death Index Interactive Search
Contents
NIST Stone Test Wall
New! Nikon CoolPix 995 Digital Camera (Pre-order)
Plants In Motion
Xdom homepage
Index of /~es/newhp/pictures/current/picnic-4-2000
Microsoft TerraServer Image Page
TerraServer -- aerial photographs and maps from the USGS and Microsoft
TopoZone - The Web's Topographic Map
CO2 Gift Engraving
NEBcutter V1.0
COSEN - Carolinas - Ohio Science Education Network
Kenyon's Online Macromolecular Museum
Molecular Modeling at Kenyon
Sound Is Energy
usagee.html
Teaching Tips
These pages are currently under construction
EVOLUTION UPDATE
Virtual Courseware for Science Education
Simulation Input Form/Results
T7web Documention and Help
USGS -- Water Resources of the United States
Uki Uki TRUE? LIES! JOURNAL
JP NET Home Page
South African Journal of Botany via EBSCOhost via DU Lib
The Ras Oncogene Product
Web Review - An Online Quizzer
Drinking Water Quality Water Testing, and Groundwater Protection
ERGO Home Page
The MIT List of Radio Stations on the Internet
Molecular Dynamics with Java
ABIM Online analysis tools
Build the Virtual Frog
Jo Cool or Jo Fool: An Online Game about Savvy Surfing
Marchese essay
abebooks.com - the world's largest source of out-of-print books!
Absolute Lyric - Hot pop, rock, R&B and dance music lyrics.
EXOBIOLOGY: An Interview with Stanley L. Miller
Spectra of Gas Discharges
Topical Supplements to the Guidelines: BIOCHEMISTRY OPTION
actionbioscience.org - examines bioscience issues in biodiversity, environment, genomics, biotechnology, evolution, new frontiers in the sciences, and education. Includes peer-reviewed articles, class lessons, and educator resources.
Agdia: Indirect ELISA for Xanthomonas campestris pv. pelargonii
www.agf.gov.b...ul/blight.pdf
Molecular Modeling
Alibris - Books You Thought You'd Never Find. Rare, Used, & Out-of-Print Books
UCSD Alumni Association
Amazon.com: buying info: Canon Powershot G1 Digital Camera
The American Botanist Booksellers
catalog.html
PhysicsQandA
Bt Corn and Monarch Butterflies
downloads_body.html
YMO
TUMBLER PAGE
Support Content for: 2003 Meeting Program
Content for: Meetings
Backpacking, Hiking, Camping -- That's us! -- BASECAMP: Your online resource for wilderness travel.
www.backpacki...contents.html
Phil Plait's Bad Astronomy: The Home Page
Gray, Henry. 1918. Anatomy of the Human Body
Beyond Discovery: The Path from Research to Human Benefit
Index of /hypermail/methods
Index of /hypermail/MOLECULAR-EVOLUTION
Biology Department -> Faculty -> Yin-Long Qiu
Kinemage Files for download
PDBsum
Biocompare - The Product Experts
BioJava.org - Main Page
Welcome to the homepage
www.biologie....ctd/eactd.htm
U. Arizona's Biology Project -- online tutorials in biology&biochem
PATRICK J. CALIE - Home Page
In Situ
Overview
MG REU
OSBP Home
Guide to Electropherogram
Dr. Robert Jansen, U.T. Austin
JOURNAL NAME ABBREVIATION, ISSN NUMBER AND COVERAGE
Lab Division Applications Index
BookFinder.com: Search for New, Out of Print and Used Books
SHOT
Enzyme Database - BRENDA
Molecule of the Month
Molecules with Silly or Unusual Names
www.broadcast.../classicrock/
Edge Of The Blade: DiscJockey Radio Stations on Yahoo!
CALPAC LASERS - LASER PRODUCTS: red laser pointers, green laser pointers, alignment lasers, adjustable alignment, on/off switch laser pointer, hands-free laser, woodturning laser tool, discount bulk laser pointers.
Carolina Biological - Teamed With Teachers
Article: EVOLUTION AND THE POPE
Review of Michael Behe's "Darwin's Black Box"
Center for Biological Timing Home Page
John P. Richardson
Leeds Chemistry Lecture Demonstrations
Enzyme Nomenclature
Nick's Place
ChemFinder Searching
Chick Publications
The Pope and Evolution - ChristianAnswers.Net
CIN - Magisterium Is Concerned with Question of Evolution For It Involves Conception of Man - Pope John Paul II Message to Pontifical Academy of Sciences October 22, 1996
www.clevelandgenomics.com
CLONTECH Catalog: MATCHMAKER Introduction
www.cmbi.kun....gambling.html
Amino Acid Information
Ribosomal Database Project II
Ribosomal Database Project II
Sam Wormley's Global Positioning System (GPS) Resources at ISU
CNN.com - Window-shoppers beware! Store owner gets tough - December 8, 2000
CNN.com In-Depth Specials - Gulf War
College Drinking: Changing the Culture
ColorVision--A Datacolor Company
www.colostate...nsgenicCrops/
Columbus Yellow Pages - Alphabetical List: P
Elements of Style Online
International Society of Molecular Evolution
The Science of Science Writing
Vascular Plant Image Gallery - Summary listing - Families A-B
Current Opinions Online
Central Washington University
DreamTech International
Dad's Rock Shop Professional Tumblers / Rock Polishers
International Dark-Sky Association
ChemLab - Chemistry 6 - Experiments Index
Courses for Spring 2002
P5110024
Majors and Minors, Denison 2000-2001 Course Catalog
Welcome, Denison 2001-2002 Course Catalog
Campus Directory - Denison University
Registration Database - Denison University
Denison University Chemistry and Biochemistry Alumni Email List
Organic Chemistry Position at Denison University
Electronic Reference Sources - Denison University
Inter-library Loan online at DU
Chemistry resources at the Denison University Library
Ohio Mushroom Society - Home page
www.denison.e...orials/forms/
JKB Summer Calendar
Bio 220 Plant Systematics: Geraniaceae
Items of Interest to Gen Chem Faculty
Index of /~kuhlman/molecules
Division of Educational Programs
WVDEP Spatial Intranet-- 24k DLG Hypsography
Dihydrogen Monoxide Research Division - dihydrogen monoxide info
Diet-ZXª : Compare Ingredients
Fun Stuff * Electric Pickle
2003 Double Helix Celebrations
Digital PhotoCorner - Home Page
Digital Camera Product Reviews: Digital Photography Review
earthviewer
Economist.com | BIOINFORMATICS
eGroups.com
Journal of Biochemical and Biophysical Methods
harbaugh
Japanese Engrish
Secondary Drinking Water Regulations: Guidance for Nuisance Chemicals
FEMP's Energy Cost Calculators
ERIC Clearinghouse On Higher Education
EthnicGrocer.com
Evanescence :: band
ExPASy - Biochemical Pathways
Swiss-PdbViewer
A Web of Online Dictionaries
Faculty of 1000 | My F1000
American Society for Biochemistry and Molecular Biology
FASEB Office of Scientific Meetings
EB 2003 - Translating the Genome
Protein Society meeting
tofc
FashionHot: Browsing Body Warmer
FearOfPhysics.com: Fear not! Physics. Explained. Finally.
Fisher/Genosys Oligos
The Minicell Adapter Kit for Fluorometers
Froguts - An amazing Online Virtual Dissection of a Frog
MONONGAHELA NATIONAL FOREST
Monongahela National Forest
www.fs.fed.us...ongahela.html
Cell Biology Laboratory Manual
Genomics glossaries
Geraniaceae Group
Welcome to Takayama By the Sea
GIS Support Center - DRGs
GongShee.com
Google
GORP - Otter Creek Wilderness Area
GPSy (TM) -- Macintosh GPS Communications
Gordon Research Conferences Home Page
Gordon Research Conferences Home Page
Engraved, personalized and imprinted green laser pointers and red laser pointers
Metabolic Pathways of Biochemistry
Half.com: Buy & Sell Books, Music, Movies, and Games...
Handheld Computers
IEA Heat Pump Centre
Walking and hiking - World's largest trail database
Internet Directory for Botany: Images
Protein General Sequence Analysis Analysis
BCM HGSC: Search Launcher Home Page
www.hgsc.bcm.tmc.edu/tools/
Congressman Bob Ney [CONTACT]
HowStuffWorks - Learn how Everything Works!
Welcome to How Stuff Works
Pathology Links
Ian Adams Environmental Photography
Klotho: Alphabetical Compound List
Circular 192
IGIA.com - Epil-Stop Advanced Hair Removal Systems
Digital Cameras Reviews - Cameras 1.9 Megapixels and Above
On the Origin Of Species
The Geek Test
Apples and Oranges-A Comparison
Insectclopedia Research Portal
International Chemistry & Science Education
Invitrogen Web Resource - Home Page
Modern Japan - Entertainment - Popular Music
Untitled Document
PrintToPDF
HotSeat
EV and LV Explained (c)MM KenRockwell.com
Paradigm Links
Artists Alphabetical
A Hotlist on One-Computer Class
Reference - Dictionary, Thesaurus, Encyclopedia, World Atlas, Fine Artist Search, Quotations, Rhyming Dictionary, CIA World Factbook, Acronym Finder
Lab Tests Online: Welcome!
blank
Outdoor Adventure Clothing by Lava Gear
Math in Daily Life
Peep Research
UCLA College Library Instruction: Thinking Critically about WWW Resources
BSCI 124 Lecture Notes -- Systematics & Evolution
LightSite.net -- Your Ultimate Light Source!
sterols, cholesterol and sterol esters, lipids and lipid analysis
Online Literature Library - Charles Darwin - The Origin of Species
LookSmart search results for "mullis"
Tutorials in Molecular Biology
Charles Darwin | British Naturalist
Colour Theory
Instant Photoshop
Workflow
Non-Dithering Colors by Hue
James Associates
AICT -- Art Images for College Teaching
Molecular models (static) from U. Szeged (Hungary)
The Primer Generator
MED-EL - Cochlear Implants - A cochlear implant is a hearing prosthesis to help profoundly deaf people
Molecular Evolutionary Genetics Analysis MEGA
MERLOT Home Page
MERLOT Home Page
Metanexus
fulldetails.asp
Kaleidoscope - Flower Power
Millipore - User Guides - Montageª Plasmid Miniprep96 Kit User Guide
Molecular Biology and Evolution
Molecular Biology and Evolution
sideprod.html
Theater of Electricity
MOTIF: Searching Protein and Nucleic Acid Sequence Motifs
Laser Pointers
AGRICOLA Home Page
Nat'l Academies Press, Evaluating and Improving Undergraduate Teaching in Science, Technology, Engineering, and Mathematics (2002), Table of Contents
www.nap.edu/r.../evolution98/
Letter to Nature: Molecular structure of Nucleic Acids
Acid-Base Equilibrium Constants (25oC)
NCBI BLAST Home Page
NCBI Blast
Genes and disease
Entrez-PubMed
OMIM Home Page -- Online Mendelian Inheritance in Man
NCBI Sequence Viewer
Visualizations in Chemistry
Why much of "Icons of Evolution" is wrong
Photography
SUMMER PROGRAM IN THE NEUROLOGICAL SCIENCES
Nature of Japanese Garden Art
National Library of Medicine's MEDLINEplus
North Country Trail Association Home Page
HEALTH at NRDC: Bottled Water: Pure Drink or Pure Hype?
NSF CCLI Documents
Crosscutting Programs: CAREER
Table of Contents
Oligonucleotide Calculator
Iraq Tells the U.N. Arms Inspections Will Be Permitted
Antiwar Song, With Whimsy
Chemical Information Chem396 Syllabus Oberlin College
Orbigen: Enabling the Proteomics Revolution
Untitled Document
The Ohio State University
Columbus Outdoor Pursuits
baker
Problem Based Learning Initiative - core page
frontline: jefferson's blood
http://www.pdblite.org/
Critical Thinking On The Web
PhotoWorks: Send film or upload images, share photos online
Strategies That Enhance Student Learning: Building on the Past, Looking to the Future
PEG Home Page
PEG Publications
Big rainbow picture
Student Expectations in University Physics
Oligo Calculator
PlantZAfrica.com Homepage
PNAS -- Abstracts: Cho et al. 95 (24): 14244
DOWNING, ANDREW J., THE FRUITS AND FRUIT TREES OF AMERICA.
Botanical Prints and Antique Prints at Prints With a Past.
Molecular Probes
Benchmarks On-Line
- Physicians and Scientists for Responsible Application of Science and Technology (PSRAST)-
MYSTERIES OF WATER: Simulating Small Water Clusters
The Macrogalleria - a cyberwonderland of polymer fun
PubCrawler Home Page
BioD G1/S checkpoint
RBGE: Phylogeny, systematics and biogeography of Geraniaceae
The RCSB Protein Data Bank
The RCSB Protein Data Bank
PDB Current Holdings
Rethinking Schools Online -- Summer 1999 -- Home Page
BLAST Homology Searching
Darwin 2000
RJL Software - Software - Desktop - AnyImage SS
Rock Tumblers
Petsko-Ringe Lab Homepage
|| The PLTL Workshop Project ||
Molecules from Chemistry at Okanagan University College
Thomas Kuhn
pH Tutorial Launch Pad
Science -- Strasser 286 (5444): 1488
Science Functional Genomics Home
ScienceWise.com Research: Funding Search
SciQuest.com - The Internet Source for Scientific Products
www.scirus.co...bodiimide%22&
Scirus - for scientific information
1998 Molecular Graphics Art Show
www.sdsc.edu/...isa/lisa.html
The Second Law of Thermodynamics
The Shaker Shoppe Furniture Page
Shaker Furniture - Shaker Workshops Fine Shaker Furniture
CD Storage Pages PGS 24 Capacity CDP3 CASE LOGIC 180 NMS ACCS ACCESSORIES PACK CDS ORGANIZERS ROM CDP
Sigma-Aldrich Home
SmartCal Facilities Scheduling
9500.html
ChemistryWeb Internet Resources
Folding@home
Chemistry Functions
Department of Administrative Services
Tax Forms
Surprise.com - Place to buy
Symbios Home Page
The Talk.Origins Archive: Home Page
Irreducible Complexity and Michael Behe
Publish or Perish: Some Published Works on Biochemical Evolution
The Talk.Origins Archive: Other Web Sites
TheLabRat.com - Home of the cow and snow leopard lab coats!
God Diagnosed With Bipolar Disorder
God Angrily Clarifies 'Don't Kill' Rule
The Ultimate White Pages
ThinkGeek :: Green Laser Pointer II
The official U.S. time - clock
TopoZone - Map View
Unification Sermons and Talks by Reverends Wells TOC
TREE-PUZZLE
Trimble - All About GPS
Turner BioSystems Luminometers, Fluorometers | Fluorimeters and Life Sciences Applications
The TD-360 Mini-Fluorometer: Versatile instrument for biotechnology applications
TD-360 Application Configuration Guide
www.udel.edu/...g/CHEM342.htm
CHEM-647 - Biochemical Evolution Home Page, Fall 2000
Teaching Goals Inventory Online
Preparing Future Faculty, Teaching and Learning Center, University of Kentucky
Kimball's Biology Pages
Protein Explorer
Knots in Proteins
RasMol Home Page
GIF image 780x546 pixels
Biochemical Tutorials in Chime
Biochemical Tutorials in Chime
1966 Molecular Model Catalogue
Teaching Tips
tea : uptontea.com - purveyor of the world's finest teas
tea : uptontea.com - information online
waste vital minutes with the PERPETUAL BUBBLEWRAP
DNA Fingerprinting
www.usm.maine...ereoView.html
Biochemistry Topics
Deep View (Swiss-PdbViewer) Tutorial
SwissPdbViewer Tutorial
SPdbV Key Modifers
SPdbVTut.html
The Well-Read Biochemist
Women and Science-- Links
Pro Vac
Vermont Soapstone Co.: Kitchen Sinks, Bathroom Sinks, Backsplashes
New Students - New Learning Styles
Essentials of Biological Chemistry
Stephenson's Warmlite
Welcome to NISE Website
CL1 - Joanne Stewart
Field-tested Learning Assessment Guide (FLAG)
The VRML Repository
WebMolecules - Categories
Weird Wisconsin's Mission Statement
lysozyme.html
John Wiley & Sons, Inc., Publishers
ActForChange : Activism Categories
Behe's Empty Box
Weather Underground: Granville, Ohio Forecast
Association for Biology Laboratory Education (ABLE)
Time Tripper
vrml_status.html
www2.ebi.ac.uk/dali/
NAR Online
Protein Profile: Search
Virtual Biology -- Shockwave animations of Cell Biology
Amersham Biosciences - CyDye Fluors for Protein Arrays
getcast_www_oh
CAFCA
Your Genes, Your Health
Sickle Cell Anemia: What is it?
laser pointers, green lasers, green laser pointers
SMBE 2003
[books ]

Books and Bookstores

[library]Indiana University Bloomington Life Science Library
[books] World Wide Study Bible
[books] The MIT Biology Hypertextbook Home Page
[books] Books from Bree
[books] The Moral Animal
[books] Adventurous Traveler Bookstore
[books] Gospelcom bible
[books] Significant Books Home page
[books] Charles Darwin's "The Origin of Species"
[chem ]

Chemical Information Resources

[chem] GLOSS -- Glossary of Historical Chemical Terms
[chem] QSAR database searching
[chem library] JChemEd Online
[chem] Niel's Timelines and Scales of Measurement List
[chem] Archives of CHMINF-L@LISTSERV.INDIANA.EDU
[chem] NIST Chemistry WebBook
[chem] VRML in Chemistry
[chem] Chemistry Links
[chem] Molecular Information Theory and the Theory of Molecular Machines
[chem] ACD Interactive Lab (tm)
[chem] Welcome to the ACSWeb from the American Chemical Society
[chem] CA Student Edition - General Information
[chem] Virtual Reality in Chemistry: A Review
[chem] Chemistry Demonstrations: ICSTM
[chem] ECTOC-1
[chem] IU Chemistry Department Home Page
[chem] The Chemist's Art Gallery -- very cool!
[chem] Chemistry Software and Information Resources
[chem] NetWelco.htm
[chem] Chemical Information Sources from Indiana University
[chem] C400 CHEMICAL INFORMATION SOURCES AND SERVICES HOME PAGE
[chem] C401 COMPUTER SOURCES FOR CHEMICAL INFORMATION HOME PAGE
[chem] C401 COMPUTER SOURCES FOR CHEMICAL INFORMATION SYLLABUS
[chem] C402 CURRENT TOPICS IN CHEMICAL INFORMATION HOME PAGE
[chem] C402 CURRENT TOPICS IN CHEMICAL INFORMATION SYLLABUS: SPRING 1997
[chem] cciimnro.html
[chem] CONTENTS OF THE CLEARINGHOUSE FOR CHEMICAL INFORMATION INSTRUCTIONAL MATERIALS (CCIIM)
[chem] Selected Internet Resources for Chemistry (SIRCh): Table of Contents
[chem] GARY WIGGINS: CURRICULUM VITAE...and a whole lot more...
[chem] Chemical Informatics Home Page at Indiana University
[chem] Molecular Visualization Tools and Sites
[chem] MSI -- Molecular simulations Inc
[chem] Periodic Table: Webelements
[chem] Dave's Math Tables
[chem] mslinks.htm
[chem] Computer Animation & Chemistry: The SN2 Reaction Mechanism
[chem] RasMol Home Page
[chem] UNL Chem. Engr. - Engineering Resources
[chem] Chemistry Packages
[bioinfo ]

Tools for Bioinformatics

[bioinfo databases] NCBI's list of organellar genomes
[dictionary ]

Dictionaries

[dictionary] BioTech's biotechnology Dictionary
[dictionary] webster's dictionary online
[dictionary] Oxford English Dictionary
[dictionary] Britannica Online
[dictionary] A Web of On-line Dictionaries
[dictionary] World Wide Words Home Page
[dictionary] Dictionary of Cell Biology
[dictionary] Visual Thesaurus
[dictionary] Japanese-English dictionary@OMRON
[entertain ]

Sources of Entertainment

[entertain] The Capt. James T. Kirk Sing-a-long Page
[entertain] the unbelievable fbi-hospital incident
[entertain] The Lurker's Guide to Babylon 5
[entertain] PETA -- People Eating Tasty Animals
[entertain] Star Trek -- The Next Generation
[evolution] Richard Dawkins:1996 Richard Dimbleby Lecture
[evolution] Papers and Commentary by Dawkins
[funding ]

Grant and Funding Opportunities

[funding] newswire
[funding] Welcome to the Foundation Center
[funding] Grants Info
[funding] FEDIX OPPORTUNITY ALERT
[funding] Electronic Research Administration
[funding] The Camille & Henry Dreyfus Foundation, Inc.
[funding] EXPERIMENTAL PROGRAM TO STIMULATE COMPETITIVE RESEARCH
[funding] Title:NSF 94-171 -- Combined Research-Curriculum Development
[funding] www.fastlane.nsf.gov
[funding] Funding Opportunities: Grants
[funding] NIH Guide: THE TRANSITION TO NIH'S NEW POLICY ON NEW INVESTIGATORS
[funding] NIH Guide: ACADEMIC RESEARCH ENHANCEMENT AWARD
[funding] Proposal Forms Kit
[funding] Grant Proposal Guide
[funding] nsf9479
[funding] nsf96102
[funding] nsf96116
[funding] nsf9787
[funding] NSF: Custom News Service
[funding] Awards for the Integration of Research and Education Solicitation
[funding] Version of 10/4/96
[funding] nsf9810
[funding] The National Science Foundation
[funding] IANWeb Resources -- Grant Opportunities, CFPs and RFPs
[hardware ]

Equipment and Hardware Information, ideas, resources

[hardware] Directions for building YAGI antennas
[hardware] High-Performance Thermoelectric Cooling Devices Made by Tellurex Corporation: Frequently Asked Questions
[hardware] A TD-360 Fluorometer Method for RNA Quantitation Using RiboGreen
[japan ]

Japan and Japanese Things

[japan] Japanese software and goodies at U.Wash
[japan] Japanese WWW, gopher, and ftp sites
[japan] Joseph Wu's Origami Page
[learn ]

Teaching and Learning Resources

[learn library] Nutshell Notes
[learn library] AAHE Bulletin
[learn library] NEA Higher Education Thought and Action Journal - Fall 2000
[learn library] Journal of College Science Teaching
[learn syllabi biochem] Welcome to Medical Biochemistry
[learn syllabi biochem] Graduate Studies
[learn syllabi biochem] WLH - Biochemistry
[learn syllabi biochem] Biochemistry II
[learn syllabi bioinfo] 3d_ali.doc
[learn syllabi bioinfo] Welcome to Computational Biology at the University of Pennsylvania
[learn syllabi bioinfo] //cbrg.inf.ethz.ch/subsection3_
[learn syllabi bioinfo] BCM's Biocomputing Course Resource List : Course Syllabi
[learn syllabi bioinfo] BCM's VSNS Biocomputing Division
[learn syllabi bioinfo] Computer Applications in Molecular Biology
[learn syllabi bioinfo] Biomolecular Structure & Design Program at UW
[learn syllabi bioinfo] PBIO 699K - Molecular Systematics
[learn syllabi bioinfo] //www.cryst.bbk.ac.uk/PPS2/
[learn syllabi bioinfo] EMBnet Biocomputing Tutorials - Introduction
[learn syllabi bioinfo] Washington University Institute for Biomedical Computing
[learn syllabi bioinfo] Principles of Protein Structure Using the Internet
[learn syllabi bioinfo] VSNS BioComputing Division Multiple Alignment Resource Page
[learn syllabi bioinfo] Biocomputing Course Resource List : Course Syllabi
[learn syllabi bioinfo] BioComputing Hypertext Coursebook
[learn syllabi bioinfo] IU's C687 -- Computing Methods in Biochemistry
[learn syllabi chemistry] CHEMISTRY COURSES ON THE INTERNET
[learn syllabi chemistry] Chemistry 1002 -- Chemistry in the Modern World Laboratory
[learn syllabi evolution] Bio 279 - Advances in Phylogenetic Methodology
[learn syllabi evolution] L318 Evolution: Home Page
[learn syllabi evolution] UC Berkely: Evolution - Integrative Biology 160 Class Home Page
[learn syllabi evolution] UC Berkely: IB160: Huelsenbeck_Lecture.html
[learn syllabi evolution] L318 Evolution Home Page
[learn syllabi evolution] Biology 252 -- Plant Morphology and Systematics
[learn] Equilibrium dialysis simulation
[learn] ACS Division of Chemical Education
[learn] ACUBE --- BioScene - Journal of College Biology Teaching
[learn] Tips for effectively using internet searching and internet resources in class assignments
[learn] Course Directory Service at IU Bloomington
[learn] Carrefour BIODIDAC Home Page
[learn] Biology Education Review
[learn] BioQUEST Curriculum Consortium
[learn] BioTech's Educational Resources Page
[learn] BioTech: Teaching Resources at Indiana University
[learn] BioTech: Educational Resources
[learn] U Washington Science Outreach Program
[learn] Active Learning For The College Classroom
[learn] About_WebQuests.html
[learn] THE BIG SIX
[learn] Archives of CICOURSE@LISTSERV.INDIANA.EDU
[learn] Informatics In Chemistry
[learn] Chem
[learn] Roller Coaster Physics Book by Tony Wayne
[learn] BioChemNet
[learn] teaching.htm
[learn] What is Plagiarism
[learn] Chemistry 145 (Van Bramer)
[learn] Mathcad in Chemistry
[learn] Educational Materials for Organic Chemistry - EMOC
[learn] Educational Hotlists at the Franklin Institute
[learn] Electronic Desktop Project Home Page
[learn] WebCourse in a Box
[learn] Academic Uses of the World Wide Web
[learn] Teaching Chemical Information
[learn] Active Learning Bibliographies
[learn] Statistics Division Education and Employment Trends
[learn] Chemistry Teaching Resources
[learn] You Can 50 ?'s
[learn] The BioQUEST Library
[learn] The Learning Connection
[learn] Biography Maker
[learn] B300_syllabus.html
[learn] Michael Tansey's general bio questions
[learn] The Biology Project
[learn] Microbiology 2604: How To Pass
[learn] Dennis Jacobs: Home
[learn] karla
[learn] BioC/MicE 5309 Home Page
[learn] Aunt Edna's Kitchen
[learn] GIC
[learn] Chemistry Hypermedia Project
[learn] Iron and the Global CO2 Problem: Student Activity
[learn] CELLS alive!
[learn] "Shaping the Future: A report to the National Science Foundation"
[learn] Welcome to the Learning Studio!
[learn] Access Excellence
[learn] HHMI Beyond Bio 101: The Transformation of Undergraduate Biology Education
[learn] HHMI's Virtual Lab: Where YOU are the scientist using antibodies to detect disease!
[learn] The Houghton-Mifflin Resource Site for Instructors of Chemistry
[learn] College Division
[learn] Chemistry Demos for the Web Science Workshop, 6/97
[learn] The Scholarship of Teaching and Learning (IU Bloomington)
[learn] Evaluating web resources -- Conference site
[learn] Medical Neuroscience
[learn] excellent integrated example -- Anthropology A105
[learn] Physiology P215
[learn] IU's Distance Learning Support Center's Internet Teaching Tips
[learn] Teaching Resources Center at Indiana University
[learn] Physiology Explorer
[learn] Teaching and Learning Technologies Lab
[learn] ChemConf '97
[learn] ChemConf '97
[learn] ChemEd Conference site
[learn] PBIO 100 1997-1998 Lecture Schedule
[learn] The Inquisitive Cook: Welcome
[learn] Blue Web'n Applications Library
[learn] Filamentality 2.0
[learn] Donald Simanek's Page -- lists and lists of links on science, pseudoscience, religion&science, cool quotes, and much, much more
[learn] Thinking critically about Web resources
[learn] UBUYACAR Student Manual
[learn] Microsoft in Higher Education
[learn] Microsoft in Higher Education
[learn] copie.html
[learn] nmr.htm
[learn] QuizMaker 2.0 - Online Quiz Creation Tool
[learn] Adviser, Teacher, Role Model, Friend
[learn] National Center for Science Education
[learn] National Center for Science Education
[learn] Richard Dawkins:1996 Richard Dimbleby Lecture
[learn] pope.htm
[learn] The Physical Chemistry Education Resource Center
[learn] Project Primary -- hands-on activities for the teaching of science
[learn] Project Primary
[learn] IUB Physics Education research
[learn] PhysLINK - The Ultimate Physics Resource: physics links, search, reference, departments, jobs, societies, journals, history of physics, fun and more
[learn] Preparing Future Faculty
[learn] Preparing Future Faculty - Job Search Resources
[learn] Preparing Future Faculty - Job Listings
[learn] PUBTEXT INTERNATIONAL (textbooks publishers directory)
[learn] Teleportation
[learn] Researchpaper.com
[learn] What Good is Math?
[learn] Virtual Office Hours for Chemistry 145
[learn] K-12 Science and Mathematics Education Resources
[learn] Papers and Commentary by Dawkins
[learn] Finer Internet Activities for Introductory Biology
[learn] Joseph H. Noggle Homepage
[learn] Teaching For Inclusion: Diversity in the College Classroom
[learn] 101 Things for the First 3 Weeks
[learn] 1998 College Rankings: USNews - edu
[learn] The World Lecture Hall
[learn] Western Governors University
[learn] Avalon Project at the Yale Law School
[learn] Molecular Modelling Course 1996
[orgs ]

Organizations and Companies

[orgs] About Explore Publications
[orgs] SARR -- Student Alliance for Responsible Research
[orgs] Welcome to the ACSWeb from the American Chemical Society
[orgs] Adbusters Culture Jammers Headquarters
[orgs] American Type Culture Collection
[orgs] Commercial Biology Sites
[orgs] Centers for Disease Control
[orgs] Doctors for Global Health
[orgs] FASEB Joint Steering Committee for Public Policy
[orgs] FringeWare Inc: Home Page
[orgs] BioDesigns, Incorporated
[orgs] Life Technologies, Inc.
[orgs] TIAA-CREF
[orgs] The USGenWeb Project, an online genealogy resource
[orgs] Sinauer Associates, Inc.
[people ]

People

[people entertain] Donald Simanek's Page -- lists and lists of links on science, pseudoscience, religion&science, cool quotes, and much, much more
[people] dePamphilis Lab homepage
[people] B. Franz Lang
[people] Renato Roncaglia
[people] Marty Pagel
[people] Harry Erwin
[people] J. Colin Cox
[people] Jeanne Sept's Home Page
[people] Danny Rice
[people] Chris Parkinson (perhaps better known as "The Snake Guy") Official home now at U of Central Florida
[people] My wonderful wife's (former) home on the net, complete with a veritable garden-full of plant images.
[people] Will Fischer, who counts among his many talents the abilities to create wondrous laboratory devices with styrofoam, and wondrous time-saving softwares with perl!
[people] Andy Wang
[people] Jordan Bennett
[people] Eric Chudler
[people] Tongjia Yin
[people] (Andrea) Wolfe Lab Homepage
[people] Gary Wiggins
[people] Chuck Delwiche
[people] H. Stewart Hendrickson
[people] Bart Schaefer, my brother-in-law and favorite Computer God
[people] IPL POTUS -- Presidents of the United States
[software ]

Internet indices&search engines, internet/web resources, and computer-use tips

[software japan]Shodouka Launchpad
[software] Infoseek Guide
[software] The HotSauce Home Page
[software] The Perl Language Home Page
[software] knowledge base menus
[software] Will Fischer's Perl scripts
[software] GCG manual and online help
[software] Macintosh Tips and Tutorials
[software] HTML Testbed
[software] USENET FAQs
[software] The HTML Goodies Home Page
[software] Publishing on the Web
[software] INTAC FAQ index
[software] ColorMaker
[software] ColorMaker Resources
[software] Rex Swain's HTMLified Perl 5 Reference Guide
[software] MacPerl FAQ
[software] HTML color chart
[software] The Art of HTML
[software] The World-Wide Web Virtual Library: Subject Catalogue
[software] Yahoo

Job searching
BioTech's Employment and Funding Opportunities
SCIENCE Professional Network
Critical Comparisons of American Colleges & Universities: Index
EvolDir's Jobs listing
Academic Chemistry Employment Clearinghouse
International Pharmajobs: Your window to the international pharmaceutical and chemical job market
Occupational Profile: Forensic Scientist (Courtesy of the U. of Manitoba)
Journals, Card Catalogs, and Literature Indices available Online
My list of frequently-accessed online journals and indices
IU's Infogate (telnet)
Indiana University Bloomington Life Science Library
OSU online library catalog
NCBI PubMed
KR ScienceBase (SM) for the World Wide Web
BioMedNet
hmsbeagle.com
SCIENCE-WEEK
TidBITS Electronic Publishing
OhioLink ISI database
OhioLink: Academic Press journals online
Time Magazine on-line
Technical Tips Online
Protein Science
Technical Tips Online
Trends In Biochemical Sciences
Trends In Ecology & Evolution
Analytical Biochemistry
Journal of Molecular Biology
Biochemical And Biophysical Research Communications
Biochimica Et Biophysica Acta (bba)/molecular Basis Of Disease
Biological Journal Of The Linnean Society
Molecular Phylogenetics and Evolution
Cladistics
EMBO Journal Online
Maps and Geographic Information
Site-finder services
U.S. Gazetteer -- local census data and links to relevant Tiger Maps
MapQuest! -- has trip-planner, interactive site-finder world atlas
Yahoo! Maps -- given address, gives you a local map
How far is it? -- Carnegie-Mellon's Distance-server
MapBlast -- in addition to the site-finder, this server says it will help you build customized maps into your web pages...
National Geographic cartographic services
XEROX PARC interactive global map
U.S. State Department Travel Warnings
PCL Map Collection
Yahoo - Science:Geography:Maps
Geography Server Gateway
Manual of Federal Geographic Data Products
Space Science and Engineering Center
United States Geological Survey Home Page
US State Topography Images
The CIA World Factbook 1995
Library of Congress / Federal Research Division / Country Studies / Area Handbook Series
The Virtual Reference Desk@Purdue -- Map Collection
Exchange rates and currency info
Out-doors and On-foot
Skeeter's Camping Guide
GORP - Great Outdoor Recreation Pages
USGS Maps
Backcountry Home Page : hiking camping backpacking trekking
Outdoor Experience Home Page
The Gear Page
Other Cool Great Outdoors Sites
Lightweight Hiking & Backpacking Contents
Bicycling Community Page
LL Bean's Park Search
The GPS Resource Library
olym.htm
NPS Outdoor Recreation Information Center
Shopping On-line
Virtual Shoping Mall
eBay Auction Classifieds
HomeFinder Online - Property Details
REI Home Page
Welcome to Pendleton!
Airfares by Internet 2/98
The New York Botanical Garden Press Catalog
The Nature Company
Nights in White Flannel
Blue Canoe Organically Grown & Untreated Cotton Bodywear
Tomorrow's World Sleepwear
thebackpacker.com - company contacts
Scientific supplies and equipment
Niles & Associates, Makers of the bibliographic software, EndNote and EndLink
Current Inventory Analytical & Laboratory Used Scientific Equipment & Instruments: Research, Biotechnology, Chemistry, Pharmaceutic
FMC BioProducts - Technical Applications
MJR Home Page
labx.com
LI-COR, inc. DNA Sequencers
Robert Passey's Vacuum Pump Extraordinaire
SciTrak -- Scientific Equipment Buyer's Guide
Epicentre Technologies
Welcome to Park Seed
Pierce Chemical Company
Boehringer Mannheim Biochemicals
NUNC Brand Products
NEB
Genosys - Home Page
DNA Sequencing Services
MediGene sequencing service
BIO 101:Merlin Core Services:DNA Sequencing Service
Davis Sequencing, an Automated DNA Sequencing Facility: General Information
Core Scientific Home Page
DNA Sequencing by SeqWright
Automated DNA Sequencing Service
CMSMBR DNA/Protein Sequencing/Synthesis Services
[weather ]

Weather

[weather]Complete Weather and Climate Synopsis for Monroe Cty from U Ky
[weather]Weather: Dayton,OhioRadar Summaryby Intellicast.com
[weather]The Weather Channel - Northeast Severe Weather Alerts
[weather]Weather Underground: Granville, Ohio Forecast

Types of links listed on this page:
Databases
Database search tools
Online sequence and structure analysis tools
Other resources and lists of lists (of lists...?)(unsorted new additions languish here...)

Databases of Macromolecular Structure and Sequence Data

Integrated -- "Genomes-plus" -- Databases

The National Center for Biotechnology Information
This is the top of the NCBI heirarchy -- your gateway to the various search services and databases they offer.
Genbank growth stats can be found at /genbank/release.notes
NCBI's FTP Site
NCBI's Entrez Browser, the user-friendly, massively hyper-linked unification of all their databases
European Bioinformatics Institute (EBI) Home Page
Human mitochodrial genome database
complete with figures, information on sequence, function, markers, mutations and diseases, and more... (contributed by Belinda Sly)
The Arabidopsis Information Management system
Arabidopsis stocks, references, researchers, sequences, YACs, and other goodies (contributed by Kan Nobuta)
MaizeDB
...a little garish, but...here's your source for information about Zea mays and its fans, plus links to other plant information servers (contributed by Kan Nobuta)
Kyoto Encyclopedia of Genes and Genomes
integration of metabolic and sequence information
WIT ("What Is There?")
a similar integration of metabolism and sequence, successor to PUMA
Overview of the E. coli Metabolic Map

Taxonomic Databases

Genome Sequences (and other genome data)

Saccharomyces cerevisiae
Saccharomyces Genomic Information Resource
SGD (Saccharomyces Genome Data), searchable by BLAST
TIGR Microbial Database -- gateway to data on all the sequenced beasties (not only those done by TIGR)
The Organellar Genome Megasequencing Project
Genome programs
Organellar genomes sequenced by OGMP
mitochondrial genomes in genbank
chloroplast genomes sequenced
Rhodobacter genome
Entrez database of genome maps
Gobase Home Page
DOGS - Database Of Genome Sizes
Terry Gaasterland's MAGPIE genome sequences list (with links to PUMA)

Other Sequence Databases

Swiss-Prot
...and ProtoMap, a database that graphically presents the relationships between the protein families in Swiss-Prot
Group I Intron Database
TIGR Database (TDB)
vector sequence database
Ribosomal RNA Database Project
The RDP Home Page
...and the VandePeer/ DeRijk/DeWachter rRNA WWW Server
Kabat Database
A database of sequences of immunological interest
hovergen
a compilation of HOmologous VERtebrate GENes
The Genome Database (this site is no longer actively maintained, as I understand it...)
and its home page
...intro.html
GenQuest - The Q server
OWL-Web
PIR - The Protein Information Resource

Tools for searching biological sequence databases

Aides to database searching
Geoffrey Barton's review of database searching
Keith Robison's guide to database searching
GenomeNet Japan's interactive map of inter-connected databases
The L585 short list of things to think about before embarking on a database search.
...and a modified version for C687...
...and an online tutorial on database searching and sequence alignment for the same class
Indiana University's ChemInfo: Sequence Searching of Proteins and Nucleic Acids

Searching by sequence similarity

Advanced BLAST searches of genbank and related databases at NCBI
This is first place to go for sequence similarity searches. The advanced BLAST page allows the user to modify a wide range of search parameters, and also has a link to the basic BLAST search page.
BLAST documentation can be found here.
Basic Local Alignment Search Tool Top Page
TIGR BLAST Search
BLITZ Search Form
fasta searching
Fasta Search Form.

Searching by keyword

GenBank query at IUBio (html)
Genbank-Sequences (IUBio gopher)
Genbank Database Query Form (NCBI www)
Entrez
Entrez nucleotide query
Entrez queries by Batch

Searching by literature reference

ISI Citation Database Search Version 3.01

Searching by taxon name or taxonomic information

Genome databases by organism
...see the links on my World of Life page

Searching for amino acid motifs indicative of protein structure/function

...this list is still in the works...
ExPASy - PROSITE top page
BCM Search Launcher
NCSA BIOLOGY WORKBENCH

On-line sequence (and structure) analysis servers

Two sites that do it all! (or pretty close...):
NCSA's Biology Workbench
Baylor College of Medicine's Biologists's Control Panel
Sequence translating, reverse-complementing, and restriction-site analysis:
Sequence Utilities at the Baylor College of Medicine (BCM)
WebGene
translations, ORF identification, and restriction-site analysis
(created by Tongjia Yin, recently of the Palmer Lab)
Format conversion (at tuliptree)
Integration of gaps and introns in protein and DNA sequences (at tuliptree)
WebCutter
only for restriction-site analysis
REBASE Home Page
DNASTAR
DNA Sequence Translation at ALCES
Oligonucleotide/Primer analysis
ABIM Online analysis tools
The Primer Generator
Oligo Calculator
Dot plots:
Large Dot Plots at ALCES
Format conversion:
BCM Sequence Utilities
Multiple alignments:
Aides to sequence alignment
ClustalX Help
plain text on-line help for ClustalW at Wash. U.
A Gentle Guide to Multiple Alignment
ALGORITHMS FOR MULTIPLE SEQUENCE ALIGNMENTS
AllAll: Related peptide sequences
Brian Golding's Brian's 721 Page
...and his guide to alignments
Karl Kjer's paper on using structure as an alignement guide for rRNA alignments
GeneDoc's Purpose and Features
Lachlan H. Bell's intro to GDE
...and another treatment of The Genetic Data Environment
Multalin interface page by Tim Downs
Scoring Matrices used in alignments
The C687 introduction to sequence alignment
...and an online tutorial on database searching and sequence alignment for the same class
Baylor's Alignment Utilities
IBCP WWW server form
CINEMA (is Java-based, so requires Netscape 3)
SeaView
Tuneup Alignment Submission Form
BOXSHADE server
BLOCK Formatter
Phylogenetic analysis: I haven't been able to try these URLs out yet, so I'm not positive about this, but I predict that you will probably want to run your phylogenetic analyses on a personal computer or UNIX box...
PHYLIP analyses at the National University of Singapore
last time I checked, you couldn't change any of the default settings...
PHYLIP bootstrapping at the Institut Pasteur
TREEGEN:tree generation from distance data
Sites with information about (non-on-line) phylogenetic analysis software
PHYLIP Home Page
Joe Felsenstein's list of Other Phylogeny Programs
Joe Felsenstein's guide to Phylogeny Programs:MEGA
The Maddisons' list of Phylogenetic Analysis Computer Programs
PAUP Condensed Heuristic Search Guide
Brian Golding's guide to Reconstructing Phylogenies
The PUZZLE Software
Ziheng Yang's PAML
Protein structure information and prediction
Amino Acid Properties
Image Library of Biological Macromolecules
ec-enzyme list
Image Library of Biological Macromolecules
EMBL Dali: email server for 3-D protein structure database searches
PDB WWW Home Page
Form for PDB query
Secondary structure prediction:
PREDATOR Documentation
The PredictProtein server
BCM Search Launcher
RNA structure prediction
The L585 introduction to sequence analysis tools
a short guide to tools (mostly ones I've used) useful for sequence manipulation, alignment, and phylogenetic analysis, with sections for UNIX, for personal computers, and the Web

Reviews, help documents, other lists like this one, and not-yet-sorted links

Indiana University's BioTech web site (kudos to Andy Ellington, Janell Baran, and the BioTech staff for a wonderful site!)
Welcome to BioTech
Science Resources Page
Introduction to Bioinformatics
BioTech Dictionary
Don Gilbert's
IUBio Archive for Biology data and software
Sunflower web page
sequence analysis biblio db (?)
The World-Wide Web Virtual Library: Biomolecules
Computational biology at Johns Hopkins (gopher)
Amos Bairoch's WWW links page
Pedro's Biomolecular research tools
Gary Wiggins' C687Internet Biomolecule Resources
embnet.news 2(2) Bioinformatics Theory

...and some not-yet-sorted additions...
DIP (Database of Interacting Proteins)
contents.html
Medakafish Home Page
bioweb.ncsa.uiuc.edu -- computational biology at NCSA
YEAST ANALYSIS
Darwin, a Computational Biochemistry Research Tool
//esg-www.mit.edu´8001/esgbio/
The 100Kb Club
SPAD : Signaling Pathway Database
recombinant_flowchart.html
Baylor College of Medicine's Molecular Biology Computation Resource -- database links collection
Baylor College of Medicine's Molecular Biology Computation Resource -- sequence analysis servers
Tufts University Nutrition Navigator -- the fastest, most reliable way to find sound nutrition information on the Web.
PSORT WWW Server
Have rRNA will travel
NIH Image Home Page -- with lots of links to other image analysis software
BioChemNet
Macromolecule
GCG Manual
L585.html
index.html
American Type Culture Collection Home Page
Cambridge School of Biological Sciences
Will Fischer's Public Perl scripts
BIOSCI bionet Newsgroup Archives
EMP Metabolic Pathways Collection
Amino Acids
Web Biochemistry
Wisconsin Package Online Help: Authorization Form
BRITE Home Page
Image Library of Biological Macromolecules
GeNETics on the Web
The LOGOS Homepage
MSI's Web Lab Gene Explorer
NRC Homepage
The Human Transcript Map
MathMol
Drug Information Database

The world of Life

Taxonomy databases
The Tree of Life Home Page
Entrez taxonomy browser
NCBI Taxonomy Browser
UC Berkeley Museum of Paleontology
UCMP Web Lift to Any Taxon
Phylogenetics Databases and Information
Guide to Cladistics
Plants
Horticulture in Virtual Perspective at the Ohio State University
lots of goodies for plant lovers, including the Plant Dictionary, "a searchable database of over 1,400 links to images and descriptions for 285 selected ornamental plants representing 60 families including: Annuals, Bulbs, Grasses, Groundcovers, Perennials, Shrubs, Trees, and Vines." (contributed by Kan Nobuta)
Green Plant Phylogeny Home Page
ITIS Homepage
Viruses of Plants - Known susceptibilities of Geraniaceae
Chez Marco's Plant Pictures
Green Plant Phylogeny Home Page
Treezilla: 500-taxon rbcL analysis
UW-Madison Botanical Garden
TreeBASE Home Page
Internet Directory for Botany - Alphabetical List
Internet Directory for Botany - Top Page
Plant Pictur